My current research interest is to develop statistical and mathematical algorithms to solve problems arise in molecular biology and public health. The area I've been
studying include DNA sequence analysis, evolutionary history reconstruction, and statistical genetics.
Here are some of my publications and related software packages:
Zhang Y, Liu J (2007) Bayesian inference of epistatic interactions in case-control studies. Nat Genet 39:1167-1173.
Software: BEAM   source
Zhang Y, Niu T, Liu J (2006) A coalescence-guided hierarchical Bayesian method for haplotype inference. Am J Hum Genet 79:313-322.
Software: CHB
Valouev A*, Zhang Y*, Schwartz DC, Waterman MS (2006) Refinement of optical map assemblies. Bioinformatics 22:1217-1224.
(* equal contribution).
Zhang Y, Waterman MS (2005) An Eulerian path approach to local multiple alignment for DNA sequences. PNAS 102:1285-1290.
Software: EulerAlign
For more information about my research, please see my CV.